› 1fyi

Solution NMR

11-MER DNA DUPLEX CONTAINING A 2'-DEOXYARISTEROMYCIN 8-OXO-GUANINE BASE PAIR;

Released:
DOI: 10.2210/pdb1fyi/pdb
PDB entry 1fyi coloured by chain, ensemble of 9 models, front view.
PDB entry 1fyi coloured by chain, ensemble of 9 models, side view.
PDB entry 1fyi coloured by chain, ensemble of 9 models, top view.
Source organism: Synthetic construct
Entry authors: Smirnov S, Johnson F, de los Santos C

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113827 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
5'-D(*CP*AP*GP*TP*GP*(2AR)P*GP*TP*CP*AP*C)-3' Chain: A
Molecule details ›
Chain: A
Length: 11 nucleotides
Theoretical weight: 3.36 KDa
Source organism: Synthetic construct
Expression system: Not provided
5'-D(*GP*TP*GP*AP*CP*(8OG)P*CP*AP*CP*TP*G)-3' Chain: B
Molecule details ›
Chain: B
Length: 11 nucleotides
Theoretical weight: 3.39 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
2 modified residues:
Ligand 2AR 1 x 2AR
Ligand 8OG 1 x 8OG

Experiments and Validation Details

Entry percentile scores
Refinement method: restrained molecular dynamics
Expression system: Not provided

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