› 1fzl

Solution NMR

DNA WITH PYRENE PAIRED AT ABASIC SITES

Released:
DOI: 10.2210/pdb1fzl/pdb
PDB entry 1fzl coloured by chain, ensemble of 6 models, front view.
PDB entry 1fzl coloured by chain, ensemble of 6 models, side view.
PDB entry 1fzl coloured by chain, ensemble of 6 models, top view.
Source organism: Synthetic construct
Primary publication:
Integrity of duplex structures without hydrogen bonding: DNA with pyrene paired at abasic sites.
Smirnov S, Matray TJ, Kool ET, de los Santos C
Nucleic Acids Res 30 5561-9 (2002)
PMID: 12490724

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113832 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
5'-D(*CP*AP*CP*AP*AP*AP*CP*AP*(PYP)P*GP*CP*AP*C)-3' Chain: A
Molecule details ›
Chain: A
Length: 13 nucleotides
Theoretical weight: 3.99 KDa
Source organism: Synthetic construct
Expression system: Not provided
5'-D(*GP*TP*GP*CP*(3DR)P*TP*GP*TP*TP*TP*GP*TP*G)-3' Chain: B
Molecule details ›
Chain: B
Length: 13 nucleotides
Theoretical weight: 3.9 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: molecular annealing
Expression system: Not provided

Quick links

Citations

5 review citations

Nucleic acid-guided assembly of aromatic chromophores.
Malinovskii et al. (2010)
4 more

1 mention without citation

Integrity of duplex structures without hydrogen bonding: DNA with pyrene paired at abasic sites.
Smirnov et al. (2002)