› 1g6d

X-ray diffraction
2.9Å resolution

STRUCTURE OF PEPTIDYL-D(CGCAATTGCG) IN THE PRESENCE OF ZINC IONS

Released:
DOI: 10.2210/pdb1g6d/pdb
PDB entry 1g6d coloured by chain, front view.
PDB entry 1g6d coloured by chain, side view.
PDB entry 1g6d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Interaction of zinc ions with d(CGCAATTGCG) in a 2.9 A resolution X-ray structure.
Soler-López M, Malinina L, Tereshko V, Zarytova V, Subirana JA
J Biol Inorg Chem 7 533-8 (2002)
PMID: 11941511

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113851 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
PEPTIDYL-D(CGCAATTGCG) Chain: A
Molecule details ›
Chain: A
Length: 10 nucleotides
Theoretical weight: 3.05 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand ZN 3 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE X11
Spacegroup: C2221
Unit cell:
a: 27.92Å b: 44.09Å c: 53.22Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.208 0.208 0.213
Expression system: Not provided

Quick links

Citations

2 review citations

Cations as hydrogen bond donors: a view of electrostatic interactions in DNA.
Subirana et al. (2003)
1 more

1 mention without citation

A large-scale association study for nanoparticle C60 uncovers mechanisms of nanotoxicity disrupting the native conformations of DNA/RNA.
Xu et al. (2012)