› 1gip

Solution NMR

THE NMR STRUCTURE OF DNA DODECAMER DETERMINED IN AQUEOUS DILUTE LIQUID CRYSTALLINE PHASE

Released:
DOI: 10.2210/pdb1gip/pdb
PDB entry 1gip coloured by chain, ensemble of 2 models, front view.
PDB entry 1gip coloured by chain, ensemble of 2 models, side view.
PDB entry 1gip coloured by chain, ensemble of 2 models, top view.
Source organism: Synthetic construct
Primary publication:
Improving the accuracy of NMR structures of DNA by means of a database potential of mean force describing base-base positional interactions.
Kuszewski J, Schwieters C, Clore GM
J Am Chem Soc 123 3903-18 (2001)
PMID: 11457140

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113866 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 12 nucleotides
Theoretical weight: 3.66 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: SIMULATED ANNEALING IN TORSION ANGLE SPACE USING A SIXTH ORDER PREDICTOR-CORRECTOR METHOD WITH AUTOMATIC TIME STEP SELECTION (C. SCHWIETERS AND G.M. CLORE)
Expression system: Not provided

Quick links

Citations

6 review citations

An Empirical Polarizable Force Field Based on the Classical Drude Oscillator Model: Development History and Recent Applications.
Lemkul et al. (2016)
5 more

4 mentions without citation

How accurate are accurate force-fields for B-DNA?
Dans et al. (2017)
3 more