› 1gqj

X-ray diffraction
1.9Å resolution

Structure of Pseudomonas cellulosa alpha-D-glucuronidase complexed with xylobiose

Released:
DOI: 10.2210/pdb1gqj/pdb
PDB entry 1gqj coloured by chain, front view.
PDB entry 1gqj coloured by chain, side view.
PDB entry 1gqj coloured by chain, top view.
Source organism: Cellvibrio japonicus
Primary publication:
The structural basis for catalysis and specificity of the Pseudomonas cellulosa alpha-glucuronidase, GlcA67A.
Nurizzo D, Nagy T, Gilbert HJ, Davies GJ
Structure 10 547-56 (2002)
PMID: 11937059

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->2)-alpha-D-(4-O-methyl)glucuronosyl links in the main chain of hardwood xylans
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109885 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Extracellular xylan exo-alpha-(1->2)-glucuronosidase Chains: A, B
Molecule details ›
Chains: A, B
Length: 708 amino acids
Theoretical weight: 80.44 KDa
Source organism: Cellvibrio japonicus
Expression system: Escherichia coli
UniProt:
  • Canonical: B3PC73 (Residues: 25-732; Coverage: 99%)
Gene names: CJA_2887, gla67A, glcA67A
Sequence domains:
Structure domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: XYP
Carbohydrate polymer
2 bound ligands:
Ligand EDO 12 x EDO
Ligand CO 8 x CO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: P1
Unit cell:
a: 69.561Å b: 74.609Å c: 87.45Å
α: 115.23° β: 93.15° γ: 109.17°
R-values:
R R work R free
0.173 0.172 0.221
Expression system: Escherichia coli

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Citations

7 review citations

Microbial hemicellulases.
Shallom et al. (2003)
6 more

1 mention without citation

Neotropical termite microbiomes as sources of novel plant cell wall degrading enzymes.
Romero Victorica et al. (2020)