› 1hb5

Electron Microscopy
12Å resolution

quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography.

Released:
DOI: 10.2210/pdb1hb5/pdb
PDB entry 1hb5 coloured by chain, front view.
PDB entry 1hb5 coloured by chain, side view.
PDB entry 1hb5 coloured by chain, top view.
Source organism: Enterobacteria phage PRD1
Primary publication:
Combined EM/X-ray imaging yields a quasi-atomic model of the adenovirus-related bacteriophage PRD1 and shows key capsid and membrane interactions.
Martín CS, Burnett RM, de Haas F, Heinkel R, Rutten T, Fuller SD, Butcher SJ, Bamford DH
Structure 9 917-30 (2001)
PMID: 11591347
Related structures: EMD-1014

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo 540-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-149666 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major capsid protein P3 Chains: A, B, C, D, E, F, G, H, I
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I
Length: 394 amino acids
Theoretical weight: 43.35 KDa
Source organism: Enterobacteria phage PRD1
Expression system: Salmonella enterica subsp. enterica serovar Typhimurium
UniProt:
  • Canonical: P22535 (Residues: 2-395; Coverage: 100%)
Gene name: III
Sequence domains: P3 major capsid protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 12Å
Relevant EMDB volumes: EMD-1014
Expression system: Salmonella enterica subsp. enterica serovar Typhimurium

Quick links

Citations

4 review citations

Evolution of viral structure.
Bamford et al. (2002)
3 more

1 mention without citation

Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future.
Burley et al. (2022)