› 1hhy

X-ray diffraction
0.89Å resolution

Deglucobalhimycin in complex with D-Ala-D-Ala

Released:
DOI: 10.2210/pdb1hhy/pdb
PDB entry 1hhy coloured by chain, front view.
PDB entry 1hhy coloured by chain, side view.
PDB entry 1hhy coloured by chain, top view.
Source organism: Amycolatopsis sp.
Primary publication:
Structures of glycopeptide antibiotics with peptides that model bacterial cell-wall precursors.
Lehmann C, Bunkóczi G, Vértesy L, Sheldrick GM
J Mol Biol 318 723-32 (2002)
PMID: 12054818

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assemblies composition:
homo dimer (preferred)
homo dodecamer
Assembly name:
PDBe Complex ID:
PDB-CPX-162218 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DEGLUCOBALHIMYCIN Chains: A, B
Molecule details ›
Chains: A, B
Length: 7 amino acids
Theoretical weight: 1.15 KDa
Source organism: Amycolatopsis sp.
Expression system: Not provided

Ligands and Environments

4 bound ligands:
Ligand DVC 2 x DVC
Ligand DAL 4 x DAL
Ligand NA 2 x NA
Ligand PGO 1 x PGO
2 modified residues:
Ligand GHP 4 x GHP
Ligand OMY 2 x OMY

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE X11
Spacegroup: P6322
Unit cell:
a: 48.444Å b: 48.444Å c: 43.086Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.122 not available 0.139
Expression system: Not provided

Quick links

Citations

1 review citation

Peptides and proteins as a continuing exciting source of inspiration for peptidomimetics.
Liskamp et al. (2011)
10 other articles

2 mentions without citation

Electronic structure of an [FeFe] hydrogenase model complex in solution revealed by X-ray absorption spectroscopy using narrow-band emission detection.
Leidel et al. (2012)
1 more