› 1ir5

Solution NMR

Solution Structure of the 17mer TF1 Binding Site

Released:
DOI: 10.2210/pdb1ir5/pdb
PDB entry 1ir5 coloured by chain, ensemble of 20 models, front view.
PDB entry 1ir5 coloured by chain, ensemble of 20 models, side view.
PDB entry 1ir5 coloured by chain, ensemble of 20 models, top view.
Source organism: Synthetic construct
Primary publication:
1H NMR studies of a 17-mer DNA duplex.
Liu W, Vu HM, Kearns DR
Biochim Biophys Acta 1574 93-9 (2002)
PMID: 11955617

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113978 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
5'-D(*CP*AP*CP*TP*AP*CP*TP*CP*TP*TP*TP*GP*TP*AP*GP*TP*G)-3' Chain: A
Molecule details ›
Chain: A
Length: 17 nucleotides
Theoretical weight: 5.17 KDa
Source organism: Synthetic construct
Expression system: Not provided
5'-D(*CP*AP*CP*TP*AP*CP*AP*AP*AP*GP*AP*GP*TP*AP*GP*TP*G)-3' Chain: B
Molecule details ›
Chain: B
Length: 17 nucleotides
Theoretical weight: 5.24 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Not provided

Quick links

Citations

1 citations in other articles

Insight into the role of N,N-dimethylaminoethyl methacrylate (DMAEMA) conjugation onto poly(ethylenimine): cell viability and gene transfection studies.
Nouri et al. (2012)