1irx

X-ray diffraction
2.6Å resolution

Crystal structure of class I lysyl-tRNA synthetase

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-129645 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysine--tRNA ligase Chains: A, B
Molecule details ›
Chains: A, B
Length: 523 amino acids
Theoretical weight: 61.66 KDa
Source organism: Pyrococcus horikoshii
Expression system: Escherichia coli
UniProt:
  • Canonical: O57963 (Residues: 1-523; Coverage: 100%)
Gene names: PH0224, lysS
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P21
Unit cell:
a: 58.945Å b: 74.767Å c: 156.945Å
α: 90° β: 90.26° γ: 90°
R-values:
R R work R free
0.247 0.225 0.292
Expression system: Escherichia coli