› 1j6o

X-ray diffraction
1.8Å resolution

Crystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution

Released:
DOI: 10.2210/pdb1j6o/pdb
PDB entry 1j6o coloured by chain, front view.
PDB entry 1j6o coloured by chain, side view.
PDB entry 1j6o coloured by chain, top view.
Source organism: Thermotoga maritima
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-194599 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
TatD-related deoxyribonuclease Chain: A
Molecule details ›
Chain: A
Length: 268 amino acids
Theoretical weight: 30.78 KDa
Source organism: Thermotoga maritima
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9WZD5 (Residues: 1-256; Coverage: 100%)
Gene name: TM_0667
Sequence domains: TatD related DNase
Structure domains: Metal-dependent hydrolases

Ligands and Environments

1 bound ligand:
Ligand IPA 1 x IPA
1 modified residue:
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P212121
Unit cell:
a: 35.05Å b: 77.25Å c: 84.53Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.19 0.224
Expression system: Escherichia coli

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