› 1kdl

Solution NMR

Solution structure of the amphipathic domain of YopD from Yersinia

Released:
DOI: 10.2210/pdb1kdl/pdb
PDB entry 1kdl coloured by chain, front view.
PDB entry 1kdl coloured by chain, side view.
PDB entry 1kdl coloured by chain, top view.
Source organism: Yersinia pseudotuberculosis IP 32953
Primary publication:
Conformational analysis by CD and NMR spectroscopy of a peptide encompassing the amphipathic domain of YopD from Yersinia.
Tengel T, Sethson I, Francis MS
Eur J Biochem 269 3659-68 (2002)
PMID: 12153562

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170292 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Type 3 secretion system translocon protein SctB Chain: A
Molecule details ›
Chain: A
Length: 23 amino acids
Theoretical weight: 2.77 KDa
Source organism: Yersinia pseudotuberculosis IP 32953
Expression system: Not provided
UniProt:
  • Canonical: Q06131 (Residues: 278-300; Coverage: 8%)
Gene names: pYV0054, sctB, yopD

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Not provided

Quick links

Citations

3 review citations

Process of protein transport by the type III secretion system.
Ghosh P. (2004)
2 more

1 mention without citation

YopD self-assembly and binding to LcrV facilitate type III secretion activity by Yersinia pseudotuberculosis.
Costa et al. (2010)