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› 1kj1

X-ray diffraction
2.2Å resolution

MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE

Released:
DOI: 10.2210/pdb1kj1/pdb
Model geometry
Fit model/data
PDB entry 1kj1 coloured by chain, front view.
PDB entry 1kj1 coloured by chain, side view.
PDB entry 1kj1 coloured by chain, top view.
Source organism: Allium sativum
Primary publication:
Re-refinement using reprocessed data to improve the quality of the structure: a case study involving garlic lectin.
Ramachandraiah G, Chandra NR, Surolia A, Vijayan M
Acta Crystallogr D Biol Crystallogr 58 414-20 (2002)
PMID: 11856826

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-174359 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Bulb-type lectin domain-containing protein Chains: A, P
Molecule details ›
Chains: A, P
Length: 109 amino acids
Theoretical weight: 11.99 KDa
Source organism: Allium sativum
UniProt:
  • Canonical: Q38789 (Residues: 177-285; Coverage: 39%)
Gene name: LECASAI3
Structure domains: Bulb-type lectin domain
Bulb-type lectin domain-containing protein Chains: D, Q
Molecule details ›
Chains: D, Q
Length: 109 amino acids
Theoretical weight: 12.17 KDa
Source organism: Allium sativum
UniProt:
  • Canonical: Q38783 (Residues: 29-137; Coverage: 70%)
Gene name: ASAII1
Structure domains: Bulb-type lectin domain

Ligands and Environments

1 bound ligand:
Ligand MAN 14 x MAN
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: RIGAKU RU200
Spacegroup: C2
Unit cell:
a: 201.831Å b: 43.516Å c: 78.736Å
α: 90° β: 112.26° γ: 90°
R-values:
R R work R free
0.211 0.211 0.251

Quick links

Citations

5 citation in other articles

A public database of macromolecular diffraction experiments.
Grabowski et al. (2016)
4 more

8 mentions without citation

Overview of the Structure⁻Function Relationships of Mannose-Specific Lectins from Plants, Algae and Fungi.
Barre et al. (2019)
7 more