1kyh

X-ray diffraction
1.6Å resolution

Structure of Bacillus subtilis YxkO, a Member of the UPF0031 Family and a Putative Kinase

Released:

Function and Biology Details

Reaction catalysed:
ADP + (6S)-6-beta-hydroxy-1,4,5,6-tetrahydronicotinamide adenine-dinucleotide = AMP + phosphate + NADH
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo tetramer
PDBe Complex ID:
PDB-CPX-161103 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
ADP-dependent (S)-NAD(P)H-hydrate dehydratase Chain: A
Molecule details ›
Chain: A
Length: 276 amino acids
Theoretical weight: 30.19 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli
UniProt:
  • Canonical: P94368 (Residues: 1-276; Coverage: 100%)
Gene names: BSU38720, nnrD, yxkO
Sequence domains: Carbohydrate kinase
Structure domains: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase

Ligands and Environments

No bound ligands
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: I422
Unit cell:
a: 91.9Å b: 91.9Å c: 170.506Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.23 0.228 0.232
Expression system: Escherichia coli