1l6e

Solution NMR

Solution structure of the docking and dimerization domain of protein kinase A II-alpha (RIIalpha D/D). Alternatively called the N-terminal dimerization domain of the regulatory subunit of protein kinase A.

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-146149 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
cAMP-dependent protein kinase type II-alpha regulatory subunit Chains: A, B
Molecule details ›
Chains: A, B
Length: 46 amino acids
Theoretical weight: 5.4 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: P12367 (Residues: 1-21, 22-44; Coverage: 11%)
Gene name: Prkar2a
Sequence domains: Regulatory subunit of type II PKA R-subunit
Structure domains: cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: Hybrid distance geometry-dynamical simulated annealing and refinement protocol for monomer structure determination, with 457 NOE-derived distance restraints (185 intra-residue, i-j=0; 136 sequential, |i-j|=1; 95 medium range, 1<|i-j|<5; 41 long range, |i-j|>4), 19 distance restraints representing hydrogen bonds (entered as 2 distances each), 25 phi- and 5 chi1-torsion angle restraints. Molecular dynamical simulated annealing protocol for dimer structure determination, using 505 NOE-derived distance restraints (185 intra-residue, i-j=0; 136 sequential, |i-j|=1; 95 medium range, 1<|i-j|<5; 25 long range, |i-j|>4; 38 inter-molecular; 26 ambiguous), 19 distance restraints representing hydrogen bonds (entered as 2 distances each), 25 phi- and 5 chi1-torsion angle restraints.
Expression system: Escherichia coli