› 1lxj

X-ray diffraction
1.8Å resolution

X-RAY STRUCTURE OF YBL001c NORTHEAST STRUCTURAL GENOMICS (NESG) CONSORTIUM TARGET YTYst72

Released:
DOI: 10.2210/pdb1lxj/pdb
PDB entry 1lxj coloured by chain, front view.
PDB entry 1lxj coloured by chain, side view.
PDB entry 1lxj coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Crystal structures of MTH1187 and its yeast ortholog YBL001c.
Tao X, Khayat R, Christendat D, Savchenko A, Xu X, Goldsmith-Fischman S, Honig B, Edwards A, Arrowsmith CH, Tong L
Proteins 52 478-80 (2003)
PMID: 12866058

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-152819 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
UPF0045 protein ECM15 Chain: A
Molecule details ›
Chain: A
Length: 104 amino acids
Theoretical weight: 11.68 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P35195 (Residues: 1-104; Coverage: 100%)
Gene names: ECM15, YBL001C, YBL0105
Sequence domains: Thiamine-binding protein
Structure domains: Alpha-Beta Plaits

Ligands and Environments

1 bound ligand:
Ligand SO4 1 x SO4
1 modified residue:
Ligand MSE 3 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4A
Spacegroup: I4122
Unit cell:
a: 67.38Å b: 67.38Å c: 133.59Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.211 0.211 0.243
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Structural proteomics: a tool for genome annotation.
Yakunin et al. (2004)
5 other articles

1 mention without citation

BCL::contact-low confidence fold recognition hits boost protein contact prediction and de novo structure determination.
Karakaş et al. (2010)