› 1nts

Solution NMR

5'(dCCPUPCPCPUPUP)3':3'(rAGGAGGAAA)5', where P=propynyl

Released:
DOI: 10.2210/pdb1nts/pdb
PDB entry 1nts coloured by chain, front view.
PDB entry 1nts coloured by chain, side view.
PDB entry 1nts coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
NMR studies of DNA single strands and DNA:RNA hybrids with and without 1-propynylation at C5 of oligopyrimidines.
Znosko BM, Barnes TW, Krugh TR, Turner DH
J Am Chem Soc 125 6090-7 (2003)
PMID: 12785839

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-114280 (preferred)
Entry contents:
1 distinct DNA molecule
1 distinct RNA molecule
Macromolecules (2 distinct):
5'-D(*(5PC)P*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3' Chain: B
Molecule details ›
Chain: B
Length: 7 nucleotides
Theoretical weight: 2.25 KDa
Source organism: Synthetic construct
Expression system: Not provided
5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' Chain: A
Molecule details ›
Chain: A
Length: 9 nucleotides
Theoretical weight: 2.98 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:
Ligand 5PC 4 x 5PC

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing, energy minimization
Expression system: Not provided

Quick links

Citations

1 review citation

Pyrene-functionalized oligonucleotides and locked nucleic acids (LNAs): tools for fundamental research, diagnostics, and nanotechnology.
Østergaard et al. (2011)
17 other articles