› 1o4w

X-ray diffraction
1.9Å resolution

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-128156 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ribonuclease VapC9 Chain: A
Molecule details ›
Chain: A
Length: 147 amino acids
Theoretical weight: 17.14 KDa
Source organism: Archaeoglobus fulgidus
Expression system: Escherichia coli
UniProt:
  • Canonical: O29664 (Residues: 1-135; Coverage: 100%)
Gene names: AF_0591, vapC9
Sequence domains: PIN like domain
Structure domains: 5'-nuclease

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P3121
Unit cell:
a: 63.705Å b: 63.705Å c: 78.04Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.191 0.188 0.235
Expression system: Escherichia coli

Quick links

Citations

3 review citations

Comparison of preribosomal RNA processing pathways in yeast, plant and human cells - focus on coordinated action of endo- and exoribonucleases.
Tomecki et al. (2017)
2 more

8 mentions without citation

Structural conservation of the PIN domain active site across all domains of life.
Senissar et al. (2017)
7 more