› 1oi4

X-ray diffraction
2.03Å resolution

Crystal Structure of yhbO from Escherichia coli

Released:
DOI: 10.2210/pdb1oi4/pdb
PDB entry 1oi4 coloured by chain, front view.
PDB entry 1oi4 coloured by chain, side view.
PDB entry 1oi4 coloured by chain, top view.
Source organism: Escherichia coli K-12
Entry authors: Claude JB, Abergel C, Claverie JM

Function and Biology Details

Reaction catalysed: 
An N(6)-(1-hydroxy-2-oxopropyl)-[protein]-L-lysine + H(2)O = a [protein]-L-lysine + lactate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-155292 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein/nucleic acid deglycase 2 Chains: A, B
Molecule details ›
Chains: A, B
Length: 193 amino acids
Theoretical weight: 21.42 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P45470 (Residues: 1-172; Coverage: 100%)
Gene names: JW5529, b3153, yhbO
Sequence domains: DJ-1/PfpI family
Structure domains: Rossmann fold

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P212121
Unit cell:
a: 68.037Å b: 72.446Å c: 75.946Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.187 0.187 0.237
Expression system: Escherichia coli BL21(DE3)

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