1ond

X-ray diffraction
3.4Å resolution

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-155897 (preferred)
Entry contents:
2 distinct polypeptide molecules
1 distinct RNA molecule
Macromolecules (3 distinct):
Large ribosomal subunit protein uL22 Chain: Q
Molecule details ›
Chain: Q
Length: 134 amino acids
Theoretical weight: 15.19 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RXJ7 (Residues: 1-134; Coverage: 100%)
Gene names: DR_0316, rplV
Sequence domains: Ribosomal protein L22p/L17e
Large ribosomal subunit protein bL32 Chain: Z
Molecule details ›
Chain: Z
Length: 60 amino acids
Theoretical weight: 6.81 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: P49228 (Residues: 1-60; Coverage: 100%)
Gene names: DR_2366, rpmF
Sequence domains: Ribosomal L32p protein family
23S ribosomal RNA Chain: 0
Molecule details ›
Chain: 0
Length: 2880 nucleotides
Theoretical weight: 933.41 KDa
Sequence domains: Bacterial large subunit ribosomal RNA

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: I222
Unit cell:
a: 170.25Å b: 411.09Å c: 695.34Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.316 0.261 0.31