› 1osr

Solution NMR

Structural study of dna duplex containaing a n-(2-deoxy-beta-erytho-pentofuranosyl) formamide frameshift by nmr and restrained molecular dynamics

Released:
DOI: 10.2210/pdb1osr/pdb
PDB entry 1osr coloured by chain, ensemble of 2 models, front view.
PDB entry 1osr coloured by chain, ensemble of 2 models, side view.
PDB entry 1osr coloured by chain, ensemble of 2 models, top view.
Source organism: Synthetic construct
Primary publication:
Structural study of DNA duplex containing an N-(2-deoxy-beta-D-erythro-pentofuranosyl) formamide frameshift by NMR and restrained molecular dynamics.
Maufrais C, Fazakerley GV, Cadet J, Boulard Y
Nucleic Acids Res 31 5930-40 (2003)
PMID: 14530441

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114324 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
5'-D(*AP*GP*GP*AP*CP*CP*AP*CP*G)-3' Chain: A
Molecule details ›
Chain: A
Length: 9 nucleotides
Theoretical weight: 2.75 KDa
Source organism: Synthetic construct
Expression system: Not provided
5'-D(*CP*GP*TP*GP*GP*(2DF)P*TP*CP*CP*T)-3' Chain: B
Molecule details ›
Chain: B
Length: 10 nucleotides
Theoretical weight: 2.95 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: MOLECULAR MODELING; SIMULATED ANNEALING; RESTRAINED MOLECULAR DYNAMICS SIMULATIONS
Expression system: Not provided

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Citations

1 review citation

Urea-aromatic interactions in biology.
Raghunathan et al. (2020)
2 other articles