› 1p9q

X-ray diffraction
2Å resolution

Structure of a hypothetical protein AF0491 from Archaeoglobus fulgidus

Released:
DOI: 10.2210/pdb1p9q/pdb
PDB entry 1p9q coloured by chain, front view.
PDB entry 1p9q coloured by chain, side view.
PDB entry 1p9q coloured by chain, top view.
Source organism: Archaeoglobus fulgidus
Primary publication:
The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism.
Savchenko A, Krogan N, Cort JR, Evdokimova E, Lew JM, Yee AA, Sánchez-Pulido L, Andrade MA, Bochkarev A, Watson JD, Kennedy MA, Greenblatt J, Hughes T, Arrowsmith CH, Rommens JM, Edwards AM
J Biol Chem 280 19213-20 (2005)
PMID: 15701634

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-128165 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ribosome maturation protein SDO1 homolog Chain: C
Molecule details ›
Chain: C
Length: 256 amino acids
Theoretical weight: 29.18 KDa
Source organism: Archaeoglobus fulgidus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O29759 (Residues: 1-234; Coverage: 100%)
Gene name: AF_0491
Sequence domains:
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P1
Unit cell:
a: 33.875Å b: 44.254Å c: 61.418Å
α: 92.74° β: 118.02° γ: 109.67°
R-values:
R R work R free
0.219 0.219 0.27
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

17 review citations

Pathophysiology and management of inherited bone marrow failure syndromes.
Shimamura et al. (2010)
16 more

4 mentions without citation

Model preparation in MOLREP and examples of model improvement using X-ray data.
Lebedev et al. (2008)
3 more