› 1pib

Solution NMR

Solution structure of DNA containing CPD opposited by GA

Released:
DOI: 10.2210/pdb1pib/pdb
PDB entry 1pib coloured by chain, ensemble of 16 models, front view.
PDB entry 1pib coloured by chain, ensemble of 16 models, side view.
PDB entry 1pib coloured by chain, ensemble of 16 models, top view.
Source organism: Synthetic construct
Primary publication:
NMR structure of the DNA decamer duplex containing double T*G mismatches of cis-syn cyclobutane pyrimidine dimer: implications for DNA damage recognition by the XPC-hHR23B complex.
Lee JH, Park CJ, Shin JS, Ikegami T, Akutsu H, Choi BS
Nucleic Acids Res 32 2474-81 (2004)
PMID: 15121904

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114388 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
5'-D(*CP*GP*CP*AP*TP*TP*AP*CP*GP*C)-3' Chain: A
Molecule details ›
Chain: A
Length: 10 nucleotides
Theoretical weight: 3 KDa
Source organism: Synthetic construct
Expression system: Not provided
5'-D(*GP*CP*GP*TP*GP*AP*TP*GP*CP*G)-3' Chain: B
Molecule details ›
Chain: B
Length: 10 nucleotides
Theoretical weight: 3.1 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Not provided

Quick links

Citations

3 review citations

The protein shuffle. Sequential interactions among components of the human nucleotide excision repair pathway.
Park et al. (2006)
2 more

3 mentions without citation

The structural impact of DNA mismatches.
Rossetti et al. (2015)
2 more