› 1q8n

Solution NMR

Solution Structure of the Malachite Green RNA Binding Aptamer

Released:
DOI: 10.2210/pdb1q8n/pdb
PDB entry 1q8n coloured by chain, ensemble of 25 models, front view.
PDB entry 1q8n coloured by chain, ensemble of 25 models, side view.
PDB entry 1q8n coloured by chain, ensemble of 25 models, top view.
Source organism: Synthetic construct
Primary publication:
Recognition of planar and nonplanar ligands in the malachite green-RNA aptamer complex.
Flinders J, DeFina SC, Brackett DM, Baugh C, Wilson C, Dieckmann T
Chembiochem 5 62-72 (2004)
PMID: 14695514

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196168 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA Aptamer Chain: A
Molecule details ›
Chain: A
Length: 38 nucleotides
Theoretical weight: 12.32 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand MGR 1 x MGR
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Not provided

Quick links

Citations

10 review citations

Riboswitches as versatile gene control elements.
Tucker et al. (2005)
9 more

11 mentions without citation

Selection and Biosensor Application of Aptamers for Small Molecules.
Pfeiffer et al. (2016)
10 more