1q9w

X-ray diffraction
1.75Å resolution

S45-18 Fab pentasaccharide bisphosphate complex

Released:
Source organism: Mus musculus
Primary publication:
Germline antibody recognition of distinct carbohydrate epitopes.
Nat Struct Biol 10 1019-25 (2003)
PMID: 14625588

Function and Biology Details

Structure analysis Details

Assemblies composition:
hetero dimer
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-125133 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (4 distinct):
Ig-like domain-containing protein Chains: A, C
Molecule details ›
Chains: A, C
Length: 219 amino acids
Theoretical weight: 24.31 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q52L64 (Residues: 21-240; Coverage: 100%)
Gene names: Gm10883, Igkv8-30
Sequence domains:
Structure domains: Immunoglobulins
Ig-like domain-containing protein Chains: B, D
Molecule details ›
Chains: B, D
Length: 226 amino acids
Theoretical weight: 24.45 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: I6L985 (Residues: 20-247; Coverage: 50%)
Gene name: Igh
Sequence domains:
Structure domains: Immunoglobulins

Ligands and Environments

Carbohydrate polymer : NEW Components: GP1, GP4, KDO
Carbohydrate polymer : NEW Components: KDO
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X8C
Spacegroup: P212121
Unit cell:
a: 71.2Å b: 113.9Å c: 133.9Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.212 0.212 0.247