› 1r2p

Solution NMR

Solution structure of domain 5 from the ai5(gamma) group II intron

Released:
DOI: 10.2210/pdb1r2p/pdb
PDB entry 1r2p coloured by chain, ensemble of 10 models, front view.
PDB entry 1r2p coloured by chain, ensemble of 10 models, side view.
PDB entry 1r2p coloured by chain, ensemble of 10 models, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Solution structure of domain 5 of a group II intron ribozyme reveals a new RNA motif.
Sigel RK, Sashital DG, Abramovitz DL, Palmer AG, Butcher SE, Pyle AM
Nat Struct Mol Biol 11 187-92 (2004)
PMID: 14745440

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195839 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
34-MER Chain: A
Molecule details ›
Chain: A
Length: 34 nucleotides
Theoretical weight: 10.97 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Not provided
Sequence domains: Group II catalytic intron

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: TORSION ANGLE MOLECULAR DYNAMICS CARTESIAN SPACE SIMULATED ANNEALING AND MOLECULAR DYNAMICS RESIDUAL DIPOLAR COUPLINGS
Expression system: Not provided

Quick links

Citations

8 review citations

Mobile group II introns.
Lambowitz et al. (2004)
7 more

4 mentions without citation

Structure of a self-splicing group II intron catalytic effector domain 5: parallels with spliceosomal U6 RNA.
Seetharaman et al. (2006)
3 more