› 1r79

Solution NMR

Solution Structure of The C1 Domain of The Human Diacylglycerol Kinase Delta

Released:
DOI: 10.2210/pdb1r79/pdb
PDB entry 1r79 coloured by chain, ensemble of 20 models, front view.
PDB entry 1r79 coloured by chain, ensemble of 20 models, side view.
PDB entry 1r79 coloured by chain, ensemble of 20 models, top view.
Source organism: Homo sapiens
Entry authors: Miyamoto K, Tomizawa T, Koshiba S, Inoue M, Kigawa T, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Reaction catalysed: 
ATP + 1,2-diacyl-sn-glycerol = ADP + 1,2-diacyl-sn-glycerol 3-phosphate
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172565 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Diacylglycerol kinase delta Chain: A
Molecule details ›
Chain: A
Length: 84 amino acids
Theoretical weight: 8.83 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q16760 (Residues: 216-286; Coverage: 6%)
Gene names: DGKD, KIAA0145
Sequence domains: Phorbol esters/diacylglycerol binding domain (C1 domain)
Structure domains: Wheat Germ Agglutinin (Isolectin 2); domain 1

Ligands and Environments

1 bound ligand:
Ligand ZN 2 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: torsion angle dynamics
Expression system: Not provided

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