› 1rut

X-ray diffraction
1.3Å resolution

Complex of LMO4 LIM domains 1 and 2 with the ldb1 LID domain

Released:
DOI: 10.2210/pdb1rut/pdb
PDB entry 1rut coloured by chain, front view.
PDB entry 1rut coloured by chain, side view.
PDB entry 1rut coloured by chain, top view.
Source organism: Mus musculus
Primary publication:
Tandem LIM domains provide synergistic binding in the LMO4:Ldb1 complex.
Deane JE, Ryan DP, Sunde M, Maher MJ, Guss JM, Visvader JE, Matthews JM
EMBO J 23 3589-98 (2004)
PMID: 15343268

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-159749 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
LIM domain-binding protein 1 Chain: X
Molecule details ›
Chain: X
Length: 188 amino acids
Theoretical weight: 20.2 KDa
Source organism: Mus musculus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P70662 (Residues: 336-375; Coverage: 10%)
Gene names: Ldb1, Nli
Sequence domains: LIM interaction domain (LID)
Structure domains: Cysteine Rich Protein

Ligands and Environments

1 bound ligand:
Ligand ZN 4 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL7-1
Spacegroup: P312
Unit cell:
a: 61.344Å b: 61.344Å c: 93.159Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.157 0.155 0.193
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

9 review citations

The LIM domain: from the cytoskeleton to the nucleus.
Kadrmas et al. (2004)
8 more

18 mentions without citation

Linkers in the structural biology of protein-protein interactions.
Reddy Chichili et al. (2013)
17 more