› 1rwu

Solution NMR

Solution structure of conserved protein YbeD from E. coli

Released:
DOI: 10.2210/pdb1rwu/pdb
PDB entry 1rwu coloured by chain, ensemble of 15 models, front view.
PDB entry 1rwu coloured by chain, ensemble of 15 models, side view.
PDB entry 1rwu coloured by chain, ensemble of 15 models, top view.
Source organism: Escherichia coli
Primary publication:
Structural similarity of YbeD protein from Escherichia coli to allosteric regulatory domains.
Kozlov G, Elias D, Semesi A, Yee A, Cygler M, Gehring K
J Bacteriol 186 8083-8 (2004)
PMID: 15547281

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-141706 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
UPF0250 protein YbeD Chain: A
Molecule details ›
Chain: A
Length: 109 amino acids
Theoretical weight: 12.42 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P0A8J4 (Residues: 1-87; Coverage: 100%)
Gene names: JW0626, b0631, ybeD
Sequence domains: Protein of unknown function (DUF493)
Structure domains: Alpha-Beta Plaits

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

8 citation in other articles

Consequences of membrane protein overexpression in Escherichia coli.
Wagner et al. (2007)
7 more

3 mentions without citation

Structural analysis of hypothetical proteins from Helicobacter pylori: an approach to estimate functions of unknown or hypothetical proteins.
Park et al. (2012)
2 more