› 1ryk

Solution NMR

Solution NMR Structure Protein yjbJ from Escherichia coli. Northeast Structural Genomics Consortium Target ET93; Ontario Centre for Structural Proteomics target EC0298_1_69;

Released:
DOI: 10.2210/pdb1ryk/pdb
PDB entry 1ryk coloured by chain, ensemble of 20 models, front view.
PDB entry 1ryk coloured by chain, ensemble of 20 models, side view.
PDB entry 1ryk coloured by chain, ensemble of 20 models, top view.
Source organism: Escherichia coli
Primary publication:
An NMR approach to structural proteomics.
Yee A, Chang X, Pineda-Lucena A, Wu B, Semesi A, Le B, Ramelot T, Lee GM, Bhattacharyya S, Gutierrez P, Denisov A, Lee CH, Cort JR, Kozlov G, Liao J, Finak G, Chen L, Wishart D, Lee W, McIntosh LP, Gehring K, Kennedy MA, Edwards AM, Arrowsmith CH
Proc Natl Acad Sci U S A 99 1825-30 (2002)
PMID: 11854485

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-159358 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
UPF0337 protein YjbJ Chain: A
Molecule details ›
Chain: A
Length: 69 amino acids
Theoretical weight: 8.34 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P68206 (Residues: 1-69; Coverage: 100%)
Gene names: JW4005, b4045, yjbJ
Sequence domains: CsbD-like
Structure domains: YjbJ

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: torsion angle dynamics, simulated annealing, restrained molecular dynamic simulations
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

26 review citations

From words to literature in structural proteomics.
Sali et al. (2003)
25 more

4 mentions without citation

The Evolution of Intein-Based Affinity Methods as Reflected in 30 years of Patent History.
Prabhala et al. (2022)
3 more