› 1sdr

X-ray diffraction
2.6Å resolution

CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE

Released:
DOI: 10.2210/pdb1sdr/pdb
PDB entry 1sdr coloured by chain, front view.
PDB entry 1sdr coloured by chain, side view.
PDB entry 1sdr coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence.
Schindelin H, Zhang M, Bald R, F��rste JP, Erdmann VA, Heinemann U
J. Mol. Biol. 249 595-603 (1995)
PMID: 7540215

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196206 (preferred)
Entry contents:
2 distinct RNA molecules
Macromolecules (2 distinct):
RNA (5'-R(*UP*AP*AP*GP*GP*AP*GP*GP*UP*GP*AP*U)-3') Chains: A, C
Molecule details ›
Chains: A, C
Length: 12 nucleotides
Theoretical weight: 3.92 KDa
Source organism: Synthetic construct
Expression system: Not provided
RNA (5'-R(*AP*UP*CP*AP*CP*CP*UP*CP*CP*UP*UP*A)-3') Chains: B, D
Molecule details ›
Chains: B, D
Length: 12 nucleotides
Theoretical weight: 3.69 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P1
Unit cell:
a: 27.69Å b: 30.9Å c: 41.98Å
α: 90.92° β: 103.63° γ: 113.81°
R-values:
R R work R free
0.195 0.195 not available
Expression system: Not provided

Quick links

Citations

8 review citations

Stitching together RNA tertiary architectures.
Hermann et al. (1999)
7 more

15 mentions without citation

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif.
Nissen et al. (2001)
14 more