› 1syz

Solution NMR

Solution structure of the S. Cerevisiae U6 intramolecular stem loop (ISL) RNA at pH 5.7

Released:
DOI: 10.2210/pdb1syz/pdb
PDB entry 1syz coloured by chain, ensemble of 14 models, front view.
PDB entry 1syz coloured by chain, ensemble of 14 models, side view.
PDB entry 1syz coloured by chain, ensemble of 14 models, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Dynamics in the U6 RNA intramolecular stem-loop: a base flipping conformational change.
Reiter NJ, Blad H, Abildgaard F, Butcher SE
Biochemistry 43 13739-47 (2004)
PMID: 15504036

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196210 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
U6 INTRAMOLECULAR STEM-LOOP RNA Chain: A
Molecule details ›
Chain: A
Length: 24 nucleotides
Theoretical weight: 7.67 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: XPLOR-NIH 2.0.6.
Expression system: Not provided

Quick links

Citations

12 review citations

Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy.
Bothe et al. (2011)
11 more

3 mentions without citation

Minimum-energy path for a u6 RNA conformational change involving protonation, base-pair rearrangement and base flipping.
Venditti et al. (2009)
2 more