› 1tcz

X-ray diffraction
1.85Å resolution

Crystal structure of a truncated version of the phage lamda protein gpD

Released:
DOI: 10.2210/pdb1tcz/pdb
PDB entry 1tcz coloured by chain, front view.
PDB entry 1tcz coloured by chain, side view.
PDB entry 1tcz coloured by chain, top view.
Source organism: Escherichia virus Lambda
Primary publication:
Crystal structure of a truncated version of the phage lambda protein gpD.
Chang C, Plückthun A, Wlodawer A
Proteins 57 866-8 (2004)
PMID: 15317025

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-137223 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid decoration protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 95 amino acids
Theoretical weight: 9.83 KDa
Source organism: Escherichia virus Lambda
Expression system: Escherichia coli
UniProt:
  • Canonical: P03712 (Residues: 16-110; Coverage: 86%)
Gene names: D, lambdap07
Sequence domains: Bacteriophage lambda head decoration protein D
Structure domains: Head decoration protein D

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X9B
Spacegroup: P21
Unit cell:
a: 58.186Å b: 99.044Å c: 59.321Å
α: 90° β: 119° γ: 90°
R-values:
R R work R free
0.191 0.191 0.232
Expression system: Escherichia coli

Quick links

Citations

2 citation in other articles

Three-dimensional structure of tropism-switching Bordetella bacteriophage.
Dai et al. (2010)
1 more

4 mentions without citation

Virus maturation: dynamics and mechanism of a stabilizing structural transition that leads to infectivity.
Steven et al. (2005)
3 more