› 1ti5

Solution NMR

Solution structure of plant defensin

Released:
DOI: 10.2210/pdb1ti5/pdb
PDB entry 1ti5 coloured by chain, ensemble of 15 models, front view.
PDB entry 1ti5 coloured by chain, ensemble of 15 models, side view.
PDB entry 1ti5 coloured by chain, ensemble of 15 models, top view.
Source organism: Vigna radiata
Primary publication:
Solution structure of the plant defensin VrD1 from mung bean and its possible role in insecticidal activity against bruchids.
Liu YJ, Cheng CS, Lai SM, Hsu MP, Chen CS, Lyu PC
Proteins 63 777-86 (2006)
PMID: 16544327

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180353 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Plant defensin Chain: A
Molecule details ›
Chain: A
Length: 46 amino acids
Theoretical weight: 5.13 KDa
Source organism: Vigna radiata
UniProt:
  • Canonical: Q6T418 (Residues: 28-73; Coverage: 100%)
Gene name: D1
Sequence domains: Gamma-thionin family
Structure domains: Knottin, scorpion toxin-like

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing, molecular dynamics

Quick links

Citations

14 review citations

Plant defensins--prospects for the biological functions and biotechnological properties.
Carvalho Ade et al. (2009)
13 more

5 mentions without citation

Plant Defensins from a Structural Perspective.
Kovaleva et al. (2020)
4 more