› 1tjz

Solution NMR

Solution Structure of the Active Site Stem-Loop of the VS Ribozyme

Released:
DOI: 10.2210/pdb1tjz/pdb
PDB entry 1tjz coloured by chain, ensemble of 20 models, front view.
PDB entry 1tjz coloured by chain, ensemble of 20 models, side view.
PDB entry 1tjz coloured by chain, ensemble of 20 models, top view.
Source organism: Synthetic construct
Primary publication:
The solution structure of the VS ribozyme active site loop reveals a dynamic "hot-spot".
Flinders J, Dieckmann T
J Mol Biol 341 935-49 (2004)
PMID: 15328609

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196219 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
VS Ribozyme Chain: A
Molecule details ›
Chain: A
Length: 22 nucleotides
Theoretical weight: 7.13 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: The structure calculations utilized standard simulated annealing protocols.
Expression system: Not provided

Quick links

Citations

2 review citations

Detection of RNA nucleobase metalation by NMR spectroscopy.
Tanaka et al. (2005)
1 more

2 mentions without citation

Insights into RNA structure and dynamics from recent NMR and X-ray studies of the Neurospora Varkud satellite ribozyme.
Dagenais et al. (2017)
1 more