› 1tvi

Solution NMR

Solution structure of TM1509 from Thermotoga maritima: VT1, a NESGC target protein

Released:
DOI: 10.2210/pdb1tvi/pdb
PDB entry 1tvi coloured by chain, ensemble of 20 models, front view.
PDB entry 1tvi coloured by chain, ensemble of 20 models, side view.
PDB entry 1tvi coloured by chain, ensemble of 20 models, top view.
Source organism: Thermotoga maritima
Primary publication:
NMR solution structure of Thermotoga maritima protein TM1509 reveals a Zn-metalloprotease-like tertiary structure.
Penhoat CH, Li Z, Atreya HS, Kim S, Yee A, Xiao R, Murray D, Arrowsmith CH, Szyperski T
J Struct Funct Genomics 6 51-62 (2005)
PMID: 15965736

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-194811 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Endoribonuclease YbeY Chain: A
Molecule details ›
Chain: A
Length: 172 amino acids
Theoretical weight: 20.16 KDa
Source organism: Thermotoga maritima
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9X1J7 (Residues: 1-150; Coverage: 100%)
Gene names: TM_1509, ybeY
Sequence domains: Endoribonuclease YbeY
Structure domains: Metalloproteases ("zincins"), catalytic domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: DYANA 1.5 with 30,000 TAD steps and simulated annealing
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species.
Conners et al. (2006)
15 other articles

1 mention without citation

Crystal Structure of the Metallo-Endoribonuclease YbeY from Staphylococcus aureus.
Lee et al. (2023)