› 1ue2

X-ray diffraction
1.4Å resolution

Crystal structure of d(GC38GAAAGCT)

Released:
DOI: 10.2210/pdb1ue2/pdb
PDB entry 1ue2 coloured by chain, front view.
PDB entry 1ue2 coloured by chain, side view.
PDB entry 1ue2 coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure of d(GCGAAAGC) (hexagonal form): a base-intercalated duplex as a stable structure.
Sunami T, Kondo J, Hirao I, Watanabe K, Miura KI, Takénaka A
Acta Crystallogr D Biol Crystallogr 60 90-6 (2004)
PMID: 14684897

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114697 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*GP*(C38)P*GP*AP*AP*AP*GP*CP*T)-3' Chain: A
Molecule details ›
Chain: A
Length: 9 nucleotides
Theoretical weight: 2.89 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

3 bound ligands:
Ligand CL 1 x CL
Ligand MG 1 x MG
Ligand NCO 1 x NCO
1 modified residue:
Ligand C38 1 x C38

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-6A
Spacegroup: P6322
Unit cell:
a: 36.736Å b: 36.736Å c: 64.754Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.209 0.209 0.236
Expression system: Not provided

Quick links

Citations

3 review citations

The Halogen Bond.
Cavallo et al. (2016)
2 more

4 mentions without citation

Halogen bonds in biological molecules.
Auffinger et al. (2004)
3 more