› 1ue3

X-ray diffraction
2.15Å resolution

Crystal structure of d(GCGAAAGC) containing hexaamminecobalt

Released:
DOI: 10.2210/pdb1ue3/pdb
PDB entry 1ue3 coloured by chain, front view.
PDB entry 1ue3 coloured by chain, side view.
PDB entry 1ue3 coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure of d(GCGAAAGC) (hexagonal form): a base-intercalated duplex as a stable structure.
Sunami T, Kondo J, Hirao I, Watanabe K, Miura KI, Takénaka A
Acta Crystallogr D Biol Crystallogr 60 90-6 (2004)
PMID: 14684897

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114698 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3' Chain: A
Molecule details ›
Chain: A
Length: 8 nucleotides
Theoretical weight: 2.46 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

3 bound ligands:
Ligand CL 1 x CL
Ligand MG 2 x MG
Ligand NCO 1 x NCO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-18B
Spacegroup: P6322
Unit cell:
a: 37.373Å b: 37.373Å c: 64.587Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.227 0.227 0.239
Expression system: Not provided

Quick links

Citations

3 review citations

The Halogen Bond.
Cavallo et al. (2016)
2 more

1 mention without citation

Three-dimensional modeling of single stranded DNA hairpins for aptamer-based biosensors.
Jeddi et al. (2017)