› 1uxo

X-ray diffraction
1.8Å resolution

The crystal structure of the ydeN gene product from B. subtilis

Released:
DOI: 10.2210/pdb1uxo/pdb
PDB entry 1uxo coloured by chain, front view.
PDB entry 1uxo coloured by chain, side view.
PDB entry 1uxo coloured by chain, top view.
Source organism: Bacillus subtilis
Primary publication:
Harvesting the high-hanging fruit: the structure of the YdeN gene product from Bacillus subtilis at 1.8 angstroms resolution.
Janda I, Devedjiev Y, Cooper D, Chruszcz M, Derewenda U, Gabrys A, Minor W, Joachimiak A, Derewenda ZS
Acta Crystallogr D Biol Crystallogr 60 1101-7 (2004)
PMID: 15159570

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-161239 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative hydrolase YdeN Chain: A
Molecule details ›
Chain: A
Length: 192 amino acids
Theoretical weight: 21.87 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P96671 (Residues: 2-190; Coverage: 100%)
Gene names: BSU05260, ydeN
Sequence domains: Serine hydrolase
Structure domains: alpha/beta hydrolase

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P212121
Unit cell:
a: 36.128Å b: 53.971Å c: 93.151Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.125 0.125 0.181
Expression system: Escherichia coli BL21(DE3)

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Citations

1 review citation

Human retinoblastoma binding protein 9, a serine hydrolase implicated in pancreatic cancers.
Vorobiev et al. (2012)
9 other articles

4 mentions without citation

Towards the prediction of protein interaction partners using physical docking.
Wass et al. (2011)
3 more