› 1vdp

X-ray diffraction
1.7Å resolution

The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space

Released:
DOI: 10.2210/pdb1vdp/pdb
PDB entry 1vdp coloured by chain, front view.
PDB entry 1vdp coloured by chain, side view.
PDB entry 1vdp coloured by chain, top view.
Source organism: Gallus gallus
Entry authors: Aibara S, Suzuki A, Kidera A, Shibata K, Yamane T, DeLucas LJ, Hirose M

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chains: A, B
Molecule details ›
Chains: A, B
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family
Structure domains: Lysozyme

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU300
Spacegroup: P21
Unit cell:
a: 28.048Å b: 62.883Å c: 60.648Å
α: 90° β: 90.9° γ: 90°
R-values:
R R work R free
0.192 0.175 0.221

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