› 1ve8

X-ray diffraction
1.65Å resolution

X-Ray analyses of oligonucleotides containing 5-formylcytosine, suggesting a structural reason for codon-anticodon recognition of mitochondrial tRNA-Met; Part 1, d(CGCGAATT(f5C)GCG)

Released:
DOI: 10.2210/pdb1ve8/pdb
PDB entry 1ve8 coloured by chain, front view.
PDB entry 1ve8 coloured by chain, side view.
PDB entry 1ve8 coloured by chain, top view.
Source organism: Synthetic construct
Entry authors: Kimura K, Ono A, Watanabe K, Takenaka A

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114720 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5FC)P*GP*CP*G)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 12 nucleotides
Theoretical weight: 3.69 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand NA 1 x NA
1 modified residue:
Ligand 5FC 2 x 5FC

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: P212121
Unit cell:
a: 25.1Å b: 41.6Å c: 65.5Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.221 0.221 0.279
Expression system: Not provided

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