› 1vj4

X-ray diffraction
1.8Å resolution

SEQUENCE-DEPENDENT CONFORMATION OF AN A-DNA DOUBLE HELIX: THE CRYSTAL STRUCTURE OF THE OCTAMER D(G-G-T-A-T-A-C-C)

Released:
DOI: 10.2210/pdb1vj4/pdb
PDB entry 1vj4 coloured by chain, front view.
PDB entry 1vj4 coloured by chain, side view.
PDB entry 1vj4 coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Sequence-dependent conformation of an A-DNA double helix. The crystal structure of the octamer d(G-G-T-A-T-A-C-C).
Shakked Z, Rabinovich D, Kennard O, Cruse WB, Salisbury SA, Viswamitra MA
J Mol Biol 166 183-201 (1983)
PMID: 6854642

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114722 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 8 nucleotides
Theoretical weight: 2.43 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P61
Unit cell:
a: 44.97Å b: 44.97Å c: 41.756Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.198 not available not available
Expression system: Not provided

Quick links

Citations

9 review citations

Origins of specificity in protein-DNA recognition.
Rohs et al. (2010)
8 more

5 mentions without citation

Molecular methods for assessment of non-covalent metallodrug-DNA interactions.
Kellett et al. (2019)
4 more