› 1vjf

X-ray diffraction
1.62Å resolution

CRYSTAL STRUCTURE OF A PUTATIVE DNA-BINDING PROTEIN (CC_0111) FROM CAULOBACTER CRESCENTUS CB15 AT 1.62 A RESOLUTION

Released:
DOI: 10.2210/pdb1vjf/pdb
PDB entry 1vjf coloured by chain, front view.
PDB entry 1vjf coloured by chain, side view.
PDB entry 1vjf coloured by chain, top view.
Source organism: Caulobacter vibrioides CB15
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189518 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 180 amino acids
Theoretical weight: 20.03 KDa
Source organism: Caulobacter vibrioides CB15
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9ABV9 (Residues: 1-168; Coverage: 100%)
Gene name: CC_0111
Sequence domains: Aminoacyl-tRNA editing domain
Structure domains: YbaK/aminoacyl-tRNA synthetase-associated domain

Ligands and Environments

2 bound ligands:
Ligand CL 1 x CL
Ligand GOL 2 x GOL
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: P43212
Unit cell:
a: 50.891Å b: 50.891Å c: 121.43Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.146 0.145 0.167
Expression system: Escherichia coli

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