› 1vk5

X-ray diffraction
1.6Å resolution

X-ray Structure of Gene Product from Arabidopsis Thaliana At3g22680

Released:
DOI: 10.2210/pdb1vk5/pdb
PDB entry 1vk5 coloured by chain, front view.
PDB entry 1vk5 coloured by chain, side view.
PDB entry 1vk5 coloured by chain, top view.
Source organism: Arabidopsis thaliana
Primary publication:
Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thaliana.
Allard ST, Bingman CA, Johnson KA, Wesenberg GE, Bitto E, Jeon WB, Phillips GN
Acta Crystallogr Sect F Struct Biol Cryst Commun 61 647-50 (2005)
PMID: 16511118

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-192318 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein RDM1 Chain: A
Molecule details ›
Chain: A
Length: 157 amino acids
Theoretical weight: 18 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9LUJ3 (Residues: 8-163; Coverage: 96%)
Gene names: At3g22680, MWI23.5, RDM1
Sequence domains: RNA-directed DNA methylation 1
Structure domains: RDM1 protein domain

Ligands and Environments

3 bound ligands:
Ligand SO4 3 x SO4
Ligand CPS 1 x CPS
Ligand EDO 4 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 14-BM-D, APS BEAMLINE 32-ID
Spacegroup: P3121
Unit cell:
a: 83.45Å b: 83.45Å c: 60.575Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.161 0.16 0.184
Expression system: Escherichia coli

Quick links

Citations

2 review citations

RNA-Directed DNA Methylation: The Evolution of a Complex Epigenetic Pathway in Flowering Plants.
Matzke et al. (2015)
1 more

2 mentions without citation

Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thaliana.
Allard et al. (2005)
1 more