› 1vkd

X-ray diffraction
2.1Å resolution

Crystal structure of a predicted glycosidase (tm1225) from thermotoga maritima msb8 at 2.10 A resolution

Released:
DOI: 10.2210/pdb1vkd/pdb
PDB entry 1vkd coloured by chain, front view.
PDB entry 1vkd coloured by chain, side view.
PDB entry 1vkd coloured by chain, top view.
Source organism: Thermotoga maritima MSB8
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assemblies composition:
homo dimer (preferred)
homo hexamer
homo trimer
Assembly name:
PDBe Complex ID:
PDB-CPX-194744 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
conserved hypothetical protein TM1225 Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 338 amino acids
Theoretical weight: 38.99 KDa
Source organism: Thermotoga maritima MSB8
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9X0V2 (Residues: 1-326; Coverage: 100%)
Gene name: TM_1225
Sequence domains: beta-1,4-mannooligosaccharide phosphorylase
Structure domains: Glycosyl hydrolase domain; family 43

Ligands and Environments

1 bound ligand:
Ligand TRS 2 x TRS
1 modified residue:
Ligand MSE 30 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.3.1
Spacegroup: P212121
Unit cell:
a: 86.867Å b: 100.908Å c: 253.433Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.164 0.162 0.204
Expression system: Escherichia coli

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