› 1vmf

X-ray diffraction
1.46Å resolution

CRYSTAL STRUCTURE OF a YBJQ-LIKE FOLD PROTEIN OF UNKNOWN FUNCTION (BH3498) FROM BACILLUS HALODURANS AT 1.46 A RESOLUTION

Released:
DOI: 10.2210/pdb1vmf/pdb
PDB entry 1vmf coloured by chain, front view.
PDB entry 1vmf coloured by chain, side view.
PDB entry 1vmf coloured by chain, top view.
Source organism: Alkalihalobacillus halodurans
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-191779 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Secondary thiamine-phosphate synthase enzyme Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 145 amino acids
Theoretical weight: 16.56 KDa
Source organism: Alkalihalobacillus halodurans
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9K772 (Residues: 1-133; Coverage: 100%)
Gene name: BH3498
Sequence domains: Uncharacterised protein family UPF0047
Structure domains: YjbQ-like

Ligands and Environments

4 bound ligands:
Ligand NA 1 x NA
Ligand ACT 2 x ACT
Ligand EDO 3 x EDO
Ligand EPE 1 x EPE
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.3.1, SSRL BEAMLINE BL11-1
Spacegroup: P212121
Unit cell:
a: 57.601Å b: 58.951Å c: 134.964Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.15 0.148 0.175
Expression system: Escherichia coli

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