› 1vpb

X-ray diffraction
1.75Å resolution

CRYSTAL STRUCTURE OF A PUTATIVE MODULATOR OF DNA GYRASE (BT3649) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.75 A RESOLUTION

Released:
DOI: 10.2210/pdb1vpb/pdb
PDB entry 1vpb coloured by chain, front view.
PDB entry 1vpb coloured by chain, side view.
PDB entry 1vpb coloured by chain, top view.
Source organism: Bacteroides thetaiotaomicron VPI-5482
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183624 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Modulator of DNA gyrase Chain: A
Molecule details ›
Chain: A
Length: 451 amino acids
Theoretical weight: 49.85 KDa
Source organism: Bacteroides thetaiotaomicron VPI-5482
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8A1L2 (Residues: 1-439; Coverage: 100%)
Gene name: BT_3649
Sequence domains:
Structure domains: PmbA/TldD superfamily

Ligands and Environments

1 bound ligand:
Ligand EDO 2 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1, ALS BEAMLINE 8.3.1
Spacegroup: C2221
Unit cell:
a: 73.541Å b: 154.968Å c: 106.12Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.18 0.178 0.204
Expression system: Escherichia coli

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