› 1vqy

X-ray diffraction
2.4Å resolution

CRYSTAL STRUCTURE OF a NIPSNAP FAMILY PROTEIN (ATU5224) FROM AGROBACTERIUM TUMEFACIENS STR. C58 AT 2.40 A RESOLUTION

Released:
DOI: 10.2210/pdb1vqy/pdb
PDB entry 1vqy coloured by chain, front view.
PDB entry 1vqy coloured by chain, side view.
PDB entry 1vqy coloured by chain, top view.
Source organism: Agrobacterium fabrum str. C58
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo octamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108959 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NIPSNAP domain-containing protein Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 116 amino acids
Theoretical weight: 13.69 KDa
Source organism: Agrobacterium fabrum str. C58
Expression system: Escherichia coli
UniProt:
  • Canonical: A9CLJ4 (Residues: 1-104; Coverage: 100%)
Gene name: Atu5224
Sequence domains: NIPSNAP
Structure domains: Alpha-Beta Plaits

Ligands and Environments

1 bound ligand:
Ligand PO4 1 x PO4
1 modified residue:
Ligand MSE 32 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.3.1
Spacegroup: P212121
Unit cell:
a: 68.035Å b: 110.924Å c: 129.927Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.189 0.186 0.244
Expression system: Escherichia coli

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