› 1w8i

X-ray diffraction
2.1Å resolution

The Structure of gene product af1683 from Archaeoglobus fulgidus.

Released:
DOI: 10.2210/pdb1w8i/pdb
PDB entry 1w8i coloured by chain, front view.
PDB entry 1w8i coloured by chain, side view.
PDB entry 1w8i coloured by chain, top view.
Source organism: Archaeoglobus fulgidus DSM 4304
Entry authors: Midwest Center for Structural Genomics (MCSG), Cuff ME, Zhang R, Ginell SL, Xu X, Savchenko A, Edwards A, Joachimiak A

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-128041 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
VapC ribonuclease AF_1683 Chain: A
Molecule details ›
Chain: A
Length: 156 amino acids
Theoretical weight: 17.96 KDa
Source organism: Archaeoglobus fulgidus DSM 4304
Expression system: Escherichia coli
UniProt:
  • Canonical: O28590 (Residues: 1-156; Coverage: 100%)
Gene name: AF_1683
Sequence domains: PIN domain
Structure domains: 5'-nuclease

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P6522
Unit cell:
a: 66.73Å b: 66.73Å c: 181.381Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.212 0.211 0.225
Expression system: Escherichia coli

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