› 1wub

X-ray diffraction
1.65Å resolution

Crystal structure of the polyisoprenoid-binding protein, TT1927b, from Thermus thermophilus HB8

Released:
DOI: 10.2210/pdb1wub/pdb
PDB entry 1wub coloured by chain, front view.
PDB entry 1wub coloured by chain, side view.
PDB entry 1wub coloured by chain, top view.
Source organism: Thermus thermophilus
Primary publication:
Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8.
Handa N, Terada T, Doi-Katayama Y, Hirota H, Tame JR, Park SY, Kuramitsu S, Shirouzu M, Yokoyama S
Protein Sci 14 1004-10 (2005)
PMID: 15741337

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-160750 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lipid/polyisoprenoid-binding YceI-like domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 178 amino acids
Theoretical weight: 19.5 KDa
Source organism: Thermus thermophilus
Expression system: Escherichia coli
UniProt:
  • Canonical: P83815 (Residues: 1-178; Coverage: 100%)
Sequence domains: YceI-like domain
Structure domains: Lipid/polyisoprenoid-binding, YceI-like

Ligands and Environments

1 bound ligand:
Ligand OTP 1 x OTP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44B2
Spacegroup: C2221
Unit cell:
a: 32.561Å b: 96.948Å c: 109.14Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.221 0.219 0.263
Expression system: Escherichia coli

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Citations

23 citation in other articles

Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil.
de Menezes et al. (2012)
22 more

4 mentions without citation

Nanoscale dewetting transition in protein complex folding.
Hua et al. (2007)
3 more