› 1wy0

X-ray diffraction
2.2Å resolution

Crystal structure of geranylgeranyl pyrophosphate synthetase from Pyrococcus horikoshii Ot3

Released:
DOI: 10.2210/pdb1wy0/pdb
PDB entry 1wy0 coloured by chain, front view.
PDB entry 1wy0 coloured by chain, side view.
PDB entry 1wy0 coloured by chain, top view.
Source organism: Pyrococcus horikoshii OT3
Entry authors: Sugahara M, Kunishima N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-129770 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
342aa long hypothetical geranylgeranyl pyrophosphate synthetase Chain: A
Molecule details ›
Chain: A
Length: 342 amino acids
Theoretical weight: 38.61 KDa
Source organism: Pyrococcus horikoshii OT3
Expression system: Escherichia coli
UniProt:
  • Canonical: O58799 (Residues: 1-342; Coverage: 100%)
Gene name: PH1072
Sequence domains: Polyprenyl synthetase
Structure domains: Farnesyl Diphosphate Synthase

Ligands and Environments

2 bound ligands:
Ligand HG 1 x HG
Ligand BR 1 x BR
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P21212
Unit cell:
a: 63.353Å b: 75.78Å c: 80.863Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.246 0.246 0.263
Expression system: Escherichia coli

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